# TESA user manual

## TESA user manual

- [Introduction](https://nigelrogasch.gitbook.io/tesa-user-manual/master.md)
- [Installation, getting started, and reporting bugs](https://nigelrogasch.gitbook.io/tesa-user-manual/getting_started.md)
- [A quick intro to TESA](https://nigelrogasch.gitbook.io/tesa-user-manual/getting_started/a_quick_overview_of_tesa.md)
- [A quick intro to Matlab](https://nigelrogasch.gitbook.io/tesa-user-manual/getting_started/a_quick_intro_to_matlab.md)
- [A quick intro to EEGLAB](https://nigelrogasch.gitbook.io/tesa-user-manual/getting_started/a_quick_intro_to_eeglab.md)
- [Reporting bugs](https://nigelrogasch.gitbook.io/tesa-user-manual/getting_started/reporting_bugs.md)
- [Overview of TMS-EEG analysis](https://nigelrogasch.gitbook.io/tesa-user-manual/an_overview_of_tms-eeg_analysis.md)
- [Find and mark TMS pulses](https://nigelrogasch.gitbook.io/tesa-user-manual/find_and_mark_tms_pulse.md)
- [Find TMS pulses](https://nigelrogasch.gitbook.io/tesa-user-manual/find_and_mark_tms_pulse/find_tms_pulse.md)
- [Find TMS pulses (alternative)](https://nigelrogasch.gitbook.io/tesa-user-manual/find_and_mark_tms_pulse/find_tms_pulse_alternative.md)
- [Fix TMS pulse latencies](https://nigelrogasch.gitbook.io/tesa-user-manual/find_and_mark_tms_pulse/fix_tms_pulse.md)
- [Remove and interpolate TMS pulse artifacts](https://nigelrogasch.gitbook.io/tesa-user-manual/remove_interpolate.md)
- [Remove TMS pulse artifact](https://nigelrogasch.gitbook.io/tesa-user-manual/remove_interpolate/remove_tms_pulse.md)
- [Interpolate removed data](https://nigelrogasch.gitbook.io/tesa-user-manual/remove_interpolate/interpolate_removed_data.md)
- [Remove TMS-evoked muscle activity and other artifacts](https://nigelrogasch.gitbook.io/tesa-user-manual/remove_minimise_tms_muscle_activity.md)
- [FastICA](https://nigelrogasch.gitbook.io/tesa-user-manual/remove_minimise_tms_muscle_activity/fastica.md)
- [Component classification (TESA)](https://nigelrogasch.gitbook.io/tesa-user-manual/remove_minimise_tms_muscle_activity/auto_comp_select.md)
- [Plot and remove components](https://nigelrogasch.gitbook.io/tesa-user-manual/remove_minimise_tms_muscle_activity/plot-and-remove-components.md)
- [Enhanced deflation method (EDM)](https://nigelrogasch.gitbook.io/tesa-user-manual/remove_minimise_tms_muscle_activity/edm.md)
- [PCA compression](https://nigelrogasch.gitbook.io/tesa-user-manual/remove_minimise_tms_muscle_activity/pca_compression.md)
- [PCA suppression](https://nigelrogasch.gitbook.io/tesa-user-manual/remove_minimise_tms_muscle_activity/pca_suppression.md)
- [Detrend](https://nigelrogasch.gitbook.io/tesa-user-manual/remove_minimise_tms_muscle_activity/detrend.md)
- [SSP–SIR](https://nigelrogasch.gitbook.io/tesa-user-manual/remove_minimise_tms_muscle_activity/ssp-sir.md)
- [SOUND](https://nigelrogasch.gitbook.io/tesa-user-manual/remove_minimise_tms_muscle_activity/sound.md): Detect and remove recording noise with SOUND
- [Filter data](https://nigelrogasch.gitbook.io/tesa-user-manual/filter_data.md)
- [Butterworth filter](https://nigelrogasch.gitbook.io/tesa-user-manual/filter_data/butterworth_filter.md)
- [Median filter](https://nigelrogasch.gitbook.io/tesa-user-manual/filter_data/median_filter.md)
- [Analyse TMS-evoked potentials](https://nigelrogasch.gitbook.io/tesa-user-manual/analyse_tms_evoked_potentials.md)
- [Extract TEPs](https://nigelrogasch.gitbook.io/tesa-user-manual/analyse_tms_evoked_potentials/extract_teps.md)
- [Find and analyse TEP peaks](https://nigelrogasch.gitbook.io/tesa-user-manual/analyse_tms_evoked_potentials/analyse_peaks.md)
- [Output peak analysis](https://nigelrogasch.gitbook.io/tesa-user-manual/analyse_tms_evoked_potentials/output_peaks.md)
- [Output peak analysis (group)](https://nigelrogasch.gitbook.io/tesa-user-manual/analyse_tms_evoked_potentials/output_peaks_group.md)
- [Plot TMS-evoked potentials](https://nigelrogasch.gitbook.io/tesa-user-manual/plot_teps.md)
- [Plot data](https://nigelrogasch.gitbook.io/tesa-user-manual/plot_teps/plot_data.md)
- [Plot data (group)](https://nigelrogasch.gitbook.io/tesa-user-manual/plot_teps/plot_data_group.md)
- [Example analysis pipelines](https://nigelrogasch.gitbook.io/tesa-user-manual/example_pipelines.md)
- [TESA functions under development](https://nigelrogasch.gitbook.io/tesa-user-manual/tesa_functions_development.md)


---

# Agent Instructions
This documentation is published with GitBook. GitBook is the documentation platform designed so that both humans and AI agents can read, navigate, and reason over technical content effectively. Learn more at gitbook.com.

## Querying This Documentation
If you need additional information, you can query the documentation dynamically by asking a question.
Perform an HTTP GET request on a page URL with the `ask` query parameter:
```
GET https://nigelrogasch.gitbook.io/tesa-user-manual/master.md?ask=<question>
```
The question should be specific, self-contained, and written in natural language.
The response will contain a direct answer to the question and relevant excerpts and sources from the documentation.
Use this mechanism when the answer is not explicitly present in the current page, you need clarification or additional context, or you want to retrieve related documentation sections.